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Genome browser tracks (BigWig)

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👷‍♀️ Under active migration 👷‍♂️​

Download ScriptManager (v0.15):​

The current version of ScriptManager is available for download here. Make sure you have Java installed.

The file ScriptManager-v0.15.jar should be placed someplace locally accessible. For example on Mac OS on the Desktop (Permissions will need to be accepted) or someplace in your home directory (Macintosh_HD:Users/userID/ScriptManager)

deeptools_gtrack.sh
bamCoverage -b mydata.bam -o mydata.bw \
    --binSize 20 --normalizeUsing BPM --smoothLength 60 \
    --extendReads 150 --centerReads -p 6 2> logs/35302_Input_-_J-Lat.log