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Genome browser tracks (BigWig)

danger

👷‍♀️ Under active migration 👷‍♂️​

Download ScriptManager (v0.15):​

The current version of ScriptManager is available for download here. Make sure you have Java installed.

The file ScriptManager-v0.15.jar should be placed someplace locally accessible. For example on Mac OS on the Desktop (Permissions will need to be accepted) or someplace in your home directory (Macintosh_HD:Users/userID/ScriptManager)

deeptools_gtrack.sh
BINSIZE=10
SMOOTH=60
CORE=12

bamCoverage -b $BAM/mydata_BX_FilteredBAM.bam  -o mydata_BX.bw --binSize $BINSIZE --normalizeUsing BPM --Offset 1 -p $CORE 2> logs/file.logs